species:   Opsin
pid:       PID1961
parent:    n_os_milR_23
paralog:   
locus:     JAAVMX010000001.1:22730547-22730602
matures:   ['UAUACCCGUUGGGAACUAAGU', 'UUAGUUGGCGGGUACUUGUG']
srr:       SRR12952898
genome:    /Users/jax/+Genomes/Fungal_genomes/Opsin.GCA_012934285.1_ASM1293428v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952898.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952898.cram JAAVMX010000001.1:22730547-22730602

0 out of bounds
3 alignments
3 proper strand
2 stranded perfect matches

       ******************       ***************         
CUAUAUACCCGUUGGGAACUAAGUGUCUUCGUCACUUAGUUGGCGGGUACUUGUGG
(((((((((((((...(((((((((.......)))))))))))))))))..)))))
---UAUACCCGUUGGGAACUAAGU-------------------------------- l=21 a=0 c
-----------------------------------UUAGUUGGCGGGUACUUGUG- l=20 a=0 c*
----------------------------------CUUAGUUGGCGGG--------- l=13 a=1 ma
---------CGUUGGGAACUAAGUG------------------------------- l=16 a=0 ma*

----------------------------------CUUAGUUGGCG----------- l=11 a=1 
----------------------------------CUUAGUUGGCGGG--------- l=13 a=1 (ma)
----------------------------------CUUAGUUGGCGGGcA------- l=15 a=1 

mb-01011
ax-1011001
ku-01
ss-100011111100
fn-011
